PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30143.m001177
Common NameLOC8287461, RCOM_1480880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 272aa    MW: 30556.7 Da    PI: 6.6689
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30143.m001177genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000165577123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ F++   L  H+++H
  30143.m001177 55 YSCSFCKREFRSAQALGGHMNVH 77
                   99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.03E-65281No hitNo description
PROSITE profilePS5015711.245582IPR007087Zinc finger, C2H2
PfamPF139124.6E-65578IPR007087Zinc finger, C2H2
SMARTSM003550.0065577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEQPQRWMLM KRRQFLKSDN FQVWKNSVND SWEERAFAED ASGHLGGCIW PPRSYSCSFC  60
KREFRSAQAL GGHMNVHRRD RARLKQSLSS SSTPHQNNSD TFQYQNHSQP TLEGFNSHFP  120
SEFCTLDHEH GPNSSSSVIA STLTSSSRVS ALSTQENLSD HTFVSSIIQE KLNRTEVVKN  180
PREEDSTGLC NDNFVETDLF VGFNSVLSRN PSTGPYGDIS CKRPKTAVSA LSLIKPCSSD  240
RYSIHSEATE ANSSSMEDID LELRLGEPPK VN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-135077229superman protein
2l1o_A1e-135077229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524213.10.0PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLB9SDZ40.0B9SDZ4_RICCO; Transcriptional regulator SUPERMAN, putative
STRINGPOPTR_0008s05930.17e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-28C2H2 family protein